Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151760206_151761926_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

151760206 - 151761926

Intron Length:

1721

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTATA

5'SS Class:

strong_major

3'SS Sequence:

TCTGTCCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACATTAT

U12 Branch Point Sequence:

ACATTATGGATT

Flanking Amino Acid:

FRFFSICGKHVTLKMLLLTV

Intron Amino Acid Position:

1319

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.9

89.1

24.1

Major BPS

63.3

0.33

1.1

41.2

Major PPT

82.4

0.73

0.8

73.4

37.1

Minor 5ss

41.7

-0.9

2.8

41.5

Minor BPS

45.7

-0.2

1.7

59.1

38.1

Associated Gene:

Gene:

NALCN

Ensembl Gene ID:

ENSAPLG00000003120

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032563

151748952 - 151967465

218514

ENSAPLT00000003194

151748952 - 151967465

218514