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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151766060_151766464_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151766060 - 151766464
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTTCTATGAACA
Flanking Amino Acid:
LAQSVLLSVKWDAADPVTVP
Intron Amino Acid Position:
1231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
78.1
36.6
Major BPS
100
1.24
0.5
100
0
Major PPT
85
0.79
0.8
82.2
34.1
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
52
0.06
1.7
66.76
39.2

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514
ENSAPLT00000003194
151748952 - 151967465
218514