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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151766572_151767102_R

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
151766572 - 151767102
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATCAAAG
5'SS Class:
weak_major
3'SS Sequence:
GTAACTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTATTTTAACT
Flanking Amino Acid:
AQPLHLPPRPDNDGFRAKMY
Intron Amino Acid Position:
1195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.1
0.24
1.2
55.2
43.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
74.3
0.55
1
70
41
Minor 5ss
44
-0.7
2.7
48.8
47.1
Minor BPS
74.3
0.84
1.2
85.02
35.1

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514
ENSAPLT00000003194
151748952 - 151967465
218514