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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151770210_151770294_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151770210 - 151770294
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
RDVIIHRVGPIHGIYIHVFV
Intron Amino Acid Position:
1131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
85.9
0.81
0.8
85.1
28.5
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514
ENSAPLT00000003194
151748952 - 151967465
218514