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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151770416_151772316_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151770416 - 151772316
Intron Length:
1901

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATACTCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TATTTGTATACT
Flanking Amino Acid:
KKPGFWVPRVWANPRNFNFD
Intron Amino Acid Position:
1090

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
75
0.56
0.9
71.1
38.7
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
45.5
-0.2
2.5
72.07
44.8

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003194
151748952 - 151967465
218514
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514