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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151776686_151779374_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151776686 - 151779374
Intron Length:
2689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
GTATTTTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
GTATTTTTAACA
Flanking Amino Acid:
CRVVVRARFNADLLGLVTYL
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
75
38.1
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
77.4
0.62
1
73.5
40.5
Minor 5ss
44.7
-0.6
2.8
53.7
43.8
Minor BPS
74.6
0.77
1.1
76.5
34.2

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032563
151748952 - 151967465
218514