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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151777113_151779374_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151777113 - 151779374
Intron Length:
2262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
CTTCTTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TTCTTTTTATAG
Flanking Amino Acid:
CRVVVRARFNASKTDPVTGA
Intron Amino Acid Position:
860

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
75
38.1
Major BPS
62
0.3
1
62.3
30.4
Major PPT
87.4
0.84
0.6
83.5
24.9
Minor 5ss
44.7
-0.6
2.8
53.7
43.8
Minor BPS
51.4
-0
1.7
59.45
42.9

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022188
151748952 - 151967465
218514
ENSAPLT00000003194
151748952 - 151967465
218514