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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151779740_151781165_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151779740 - 151781165
Intron Length:
1426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTCGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CCTCATTTAAAA
Flanking Amino Acid:
GKSLETLTQDHSNTVRYRNA
Intron Amino Acid Position:
789

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
74.7
41.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
85.2
0.79
0.7
78.2
35.7
Minor 5ss
38.4
-1.3
3.1
54.9
42.4
Minor BPS
50
-0
1.6
58.75
40.8

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003194
151748952 - 151967465
218514
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514