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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151781778_151789028_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151781778 - 151789028
Intron Length:
7251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTCTAT
U12 Branch Point Sequence:
TATTTCTTCATA
Flanking Amino Acid:
EKETAINKILRACTRQRMLS
Intron Amino Acid Position:
731

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
65
0.37
1.3
64.5
42.5
Major PPT
81.1
0.7
0.7
76.8
31.5
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
65.3
0.47
1.7
75.8
35.8

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514
ENSAPLT00000003194
151748952 - 151967465
218514