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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151836643_151843066_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151836643 - 151843066
Intron Length:
6424

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CGG|GCAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GAATTGTTAATA
Flanking Amino Acid:
ELDRFTTFPRAFMSMFQILT
Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1.1
84.7
32.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
99
1.1
0.4
96
13.8
Minor 5ss
28.5
-2.5
3.8
34
41.5
Minor BPS
51.6
0.05
2
61.71
38.5

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514
ENSAPLT00000003194
151748952 - 151967465
218514