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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151843259_151849161_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151843259 - 151849161
Intron Length:
5903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTTCTTTACA
Flanking Amino Acid:
LYHSQFTYFQVLRVVRLIKI
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.1
31.9
Major BPS
83
0.82
0.8
82
24.9
Major PPT
92.2
0.95
0.6
87.4
23.1
Minor 5ss
44.3
-0.6
2.8
57.2
47.1
Minor BPS
71
0.65
1.6
78.67
37.8

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003194
151748952 - 151967465
218514
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514