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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151886965_151889733_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
151886965 - 151889733
Intron Length:
2769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTAC
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTGACAACT
Flanking Amino Acid:
SSTTSTATTQMFHEDAAGGW
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.5
32.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.9
0.67
1
79
33.3
Minor 5ss
30.9
-2.2
3.3
40.1
46.3
Minor BPS
45.5
-0.2
2.4
74.5
42

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514
ENSAPLT00000003194
151748952 - 151967465
218514