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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151942174_151942923_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151942174 - 151942923
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
TGCCTGTGCACT
Flanking Amino Acid:
LPRTRITNILKRSGEQIWSV
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
80.6
0.69
0.9
75.9
38
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
39.9
-0.7
2.4
58.31
44.6

Associated Gene:

Gene:
NALCN
Ensembl Gene ID:
ENSAPLG00000003120
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032563
151748952 - 151967465
218514
ENSAPLT00000022188
151748952 - 151967465
218514
ENSAPLT00000003194
151748952 - 151967465
218514