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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_151985818_151987045_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
151985818 - 151987045
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTGTCCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTGACTACAGCT
Flanking Amino Acid:
GLRPAAPPSLRSALGSPAAC
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
75.8
0.58
0.8
73.3
31.6
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
44.6
-0.3
2
66.09
44.3

Associated Gene:

Gene:
ITGBL1
Ensembl Gene ID:
ENSAPLG00000003537
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020692
151985420 - 152135418
149999
ENSAPLT00000003608
151985420 - 152135418
149999