Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152045025_152050100_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

152045025 - 152050100

Intron Length:

5076

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGACGT

5'SS Class:

strong_major

3'SS Sequence:

TAAATGTTTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTAAA

U12 Branch Point Sequence:

TATATCTTAAAT

Flanking Amino Acid:

NSQDIICSGAGTCQCGRCKC

Intron Amino Acid Position:

156

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.6

0.93

0.9

75.5

40.6

Major BPS

77.8

0.69

78.2

31.8

Major PPT

73.9

0.54

69.8

45.3

Minor 5ss

33.7

-1.9

3.2

48.4

47.1

Minor BPS

0.74

1.4

83.31

36.9

Associated Gene:

Gene:

ITGBL1

Ensembl Gene ID:

ENSAPLG00000003537

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003608

151985420 - 152135418

149999

ENSAPLT00000020692

151985420 - 152135418

149999