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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152056963_152061491_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
152056963 - 152061491
Intron Length:
4529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCATTGGAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TAATCTTTAACT
Flanking Amino Acid:
YDRYSDDFCSGHGQCNCGRC
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
53.6
0.08
1.2
55.8
43
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
83.8
1.14
1
90.27
33

Associated Gene:

Gene:
ITGBL1
Ensembl Gene ID:
ENSAPLG00000003537
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020692
151985420 - 152135418
149999
ENSAPLT00000003608
151985420 - 152135418
149999