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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152127619_152134486_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152127619 - 152134486
Intron Length:
6868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CATTCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGCCCTTTATT
Flanking Amino Acid:
SEDGVLCSGKGNGVCNCGNC
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
73.9
0.54
0.9
65.7
40.6
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
66.9
0.61
1.6
81.55
40.1

Associated Gene:

Gene:
ITGBL1
Ensembl Gene ID:
ENSAPLG00000003537
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020692
151985420 - 152135418
149999