About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152134602_152135145_F


Intron Information:

Intron Rank:
11

Intron Class:
major

Intron Phase:
3UTR

Intron Coordinates:
152134602 - 152135145

Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GAG|GTTGTTGGT

5'SS Class:
major

3'SS Sequence:
GATTATTCCCCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTAAC

U12 Branch Point Sequence:
TTCTTTCTAACC

Flanking Amino Acid:
3UTR

Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
63.2
0.31
1.3
61.1
43.6

Major BPS
84.6
0.86
0.8
83.9
22.3

Major PPT
71.8
0.49
0.9
62.4
43.7

Minor 5ss
29.4
-2.4
3.3
41.9
44.6

Minor BPS
63.3
0.4
1.6
74.1
37

Associated Gene:

Gene:
ITGBL1

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

151985420 - 152135418
149999

151985420 - 152135418
149999