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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152142556_152145106_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152142556 - 152145106
Intron Length:
2551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTTTCT
Flanking Amino Acid:
AAHFLPKPLEVAMYREPSLH
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
79.1
30.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
83.5
0.75
0.7
81.7
23.3
Minor 5ss
35.8
-1.6
3.4
49.2
47.3
Minor BPS
47.9
-0
3.6
87.49
38.1

Associated Gene:

Gene:
FGF14
Ensembl Gene ID:
ENSAPLG00000003780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033000
152141212 - 152278543
137332
ENSAPLT00000003866
152142419 - 152303124
160706