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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152145306_152235263_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152145306 - 152235263
Intron Length:
89958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTCCTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TATCATTTAACA
Flanking Amino Acid:
LNGEGFLYTSELFTPECKFK
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
72.9
36.6
Major BPS
79.4
0.73
1
80.1
32
Major PPT
82
0.72
0.7
76.6
25.5
Minor 5ss
39.2
-1.2
2.7
53
37.4
Minor BPS
67.5
0.55
1.5
75.39
35.1

Associated Gene:

Gene:
FGF14
Ensembl Gene ID:
ENSAPLG00000003780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033000
152141212 - 152278543
137332
ENSAPLT00000003866
152142419 - 152303124
160706