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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152244987_152303093_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152244987 - 152303093
Intron Length:
58107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGATCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
AGTGACAAAATA
Flanking Amino Acid:
MKQFIGTLVIDPQLKGIVTR
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
71.3
33.2
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
84.5
0.78
0.8
81.2
36.5
Minor 5ss
45.3
-0.5
2.7
60.2
44.5
Minor BPS
41.9
-0.6
2
52.38
39.5

Associated Gene:

Gene:
FGF14
Ensembl Gene ID:
ENSAPLG00000003780
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003866
152142419 - 152303124
160706