About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152560965_152566578_F

Intron Information:

Intron Rank:
138355
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
152560965 - 152566578
Intron Length:
5614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCAACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATCTCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
100
1.24
0.5
100
0
Major PPT
51.8
0.04
1.1
50.2
37.5
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
53.2
0.1
1.7
65.39
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024446
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045772
152560892 - 152567991
7100