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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152566736_152567561_F

Intron Information:

Intron Rank:
138356
Intron Class:
major
Intron Phase:
Intron Coordinates:
152566736 - 152567561
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGGTC
5'SS Class:
major
3'SS Sequence:
TTTTGTACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
AAATCCTTAGGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.1
60.4
38.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
79.3
0.66
0.9
73.7
35.7
Minor 5ss
27.3
-2.6
3.7
40.8
45.8
Minor BPS
54.2
0.11
1.9
63.24
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024446
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045772
152560892 - 152567991
7100