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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152624298_152629147_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152624298 - 152629147
Intron Length:
4850

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
CTTTCGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GATCTTTCAATT
Flanking Amino Acid:
GVDPGAPGMQITTDGKPKIV
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
86.7
0.83
0.8
84.1
30.8
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
52.9
0.17
1.5
67.31
37.5

Associated Gene:

Gene:
TPP2
Ensembl Gene ID:
ENSAPLG00000003791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046702
152623276 - 152671354
48079
ENSAPLT00000026825
152623276 - 152671627
48352
ENSAPLT00000003997
152623276 - 152670854
47579
ENSAPLT00000047209
152623276 - 152670048
46773