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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152629277_152629758_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152629277 - 152629758
Intron Length:
482

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTAGTTAACC
Flanking Amino Acid:
IIGLSGRSLKIPANWVNPSG
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.4
0.86
0.7
85
29.6
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
53.7
0.1
2.2
68.49
42.8

Associated Gene:

Gene:
TPP2
Ensembl Gene ID:
ENSAPLG00000003791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046702
152623276 - 152671354
48079
ENSAPLT00000026825
152623276 - 152671627
48352
ENSAPLT00000003997
152623276 - 152670854
47579
ENSAPLT00000047209
152623276 - 152670048
46773