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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152631081_152631767_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152631081 - 152631767
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATTAC
U12 Branch Point Sequence:
TTGTTGTCAACA
Flanking Amino Acid:
CLVWNDGETWRACIDTTESG
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
58.2
0.21
1
49.8
34.7
Major PPT
74.3
0.55
1
70
40.3
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
52.2
0.06
2.2
70.88
41.7

Associated Gene:

Gene:
TPP2
Ensembl Gene ID:
ENSAPLG00000003791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003997
152623276 - 152670854
47579
ENSAPLT00000047209
152623276 - 152670048
46773
ENSAPLT00000046702
152623276 - 152671354
48079
ENSAPLT00000026825
152623276 - 152671627
48352