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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152633075_152633457_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152633075 - 152633457
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGGGTATT
5'SS Class:
major
3'SS Sequence:
TTTACTTTATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTACTTTATT
Flanking Amino Acid:
METGTGLIRAMIEAIKYKCD
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.1
71.2
40.3
Major BPS
100
1.24
0.5
100
0
Major PPT
78
0.63
0.9
78.6
34.4
Minor 5ss
37.7
-1.4
3.3
60.3
44.3
Minor BPS
69
0.68
1.8
89.22
35.1

Associated Gene:

Gene:
TPP2
Ensembl Gene ID:
ENSAPLG00000003791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046702
152623276 - 152671354
48079
ENSAPLT00000026825
152623276 - 152671627
48352
ENSAPLT00000003997
152623276 - 152670854
47579
ENSAPLT00000047209
152623276 - 152670048
46773