About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152659093_152659211_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152659093 - 152659211
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTCTG
5'SS Class:
major
3'SS Sequence:
TTCTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGTACTTTCATG
Flanking Amino Acid:
LRDLKIQWMTKLDTPDMYNE
Intron Amino Acid Position:
1071

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.6
44.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
84.1
0.77
0.7
77.3
31.4
Minor 5ss
38.5
-1.3
3.2
49.8
40.7
Minor BPS
51.8
-0
1.8
60.44
42

Associated Gene:

Gene:
TPP2
Ensembl Gene ID:
ENSAPLG00000003791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003997
152623276 - 152670854
47579
ENSAPLT00000047209
152623276 - 152670048
46773
ENSAPLT00000046702
152623276 - 152671354
48079
ENSAPLT00000026825
152623276 - 152671627
48352