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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152660367_152661658_F

Intron Information:

Intron Rank:
28
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
152660367 - 152661658
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACCTACC
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAATAT
U12 Branch Point Sequence:
AAGTCCTTAATA
Flanking Amino Acid:
DPRPDATTIKNEMEKQKSTL
Intron Amino Acid Position:
1147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.1
0.31
1.2
63.7
41.1
Major BPS
67.5
0.44
1.1
63.7
42.3
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
43.2
-0.7
2.8
55.3
35.9
Minor BPS
77
0.84
1.1
75.09
36.3

Associated Gene:

Gene:
TPP2
Ensembl Gene ID:
ENSAPLG00000003791
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047209
152623276 - 152670048
46773
ENSAPLT00000046702
152623276 - 152671354
48079
ENSAPLT00000026825
152623276 - 152671627
48352
ENSAPLT00000003997
152623276 - 152670854
47579