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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152672450_152672709_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152672450 - 152672709
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATGAATTAAAA
Flanking Amino Acid:
GLVSIVACILGAYVTATDLP
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.9
0.67
0.8
78.6
35.1
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
48.8
-0
2
64.54
40.9

Associated Gene:

Gene:
METTL21C
Ensembl Gene ID:
ENSAPLG00000004581
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004701
152672055 - 152679101
7047