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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152672828_152674318_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152672828 - 152674318
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ACTGATATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGCAGCTTAACT
Flanking Amino Acid:
EHFGAVVWPGALALSQYLES
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.9
90.9
28.7
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
67.6
0.4
1
63.4
42
Minor 5ss
41.2
-1
2.9
52.2
44.4
Minor BPS
62.7
0.48
1.9
77.46
44.6

Associated Gene:

Gene:
METTL21C
Ensembl Gene ID:
ENSAPLG00000004581
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004701
152672055 - 152679101
7047