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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152694816_152696211_R

Intron Information:

Intron Rank:
139270
Intron Class:
major
Intron Phase:
Intron Coordinates:
152694816 - 152696211
Intron Length:
1396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGACTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTCTTCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
88.8
25
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
79.5
0.66
0.9
70
40.5
Minor 5ss
45.4
-0.5
2.5
59.5
45.1
Minor BPS
56.8
0.29
1.7
75.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022384
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027226
152693316 - 152696521
3206