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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152703537_152705397_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152703537 - 152705397
Intron Length:
1861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGCCG
5'SS Class:
major
3'SS Sequence:
GTTTCATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTGTTTCATT
Flanking Amino Acid:
MSGHAEVQVKIPFGNK
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
59.6
44.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.8
0.65
0.9
70.5
40.2
Minor 5ss
37.2
-1.5
3.2
47.9
47.8
Minor BPS
50.5
0.1
2.2
74.65
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004586
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004707
152703519 - 152711634
8116