About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152707126_152708692_F

Intron Information:

Intron Rank:
3
Intron Class:
major_hybrid
Intron Phase:
1
Intron Coordinates:
152707126 - 152708692
Intron Length:
1567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
ACGTGGGAGAAAG|G
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTTCCTTTATT
Flanking Amino Acid:
DYKLSGVFLAGRSMGSRAAA
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
43.7
-0.3
1.2
33
39.5
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
81.6
1.08
1.4
96.2
29.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004586
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004707
152703519 - 152711634
8116