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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152710276_152710862_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
152710276 - 152710862
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTGGT
5'SS Class:
major
3'SS Sequence:
AAATACTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GCAACCTTAATA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
66.3
39.5
Major BPS
80
0.75
1
78.6
31
Major PPT
62.1
0.27
1
54.7
40
Minor 5ss
31.2
-2.2
3.3
45.7
43.5
Minor BPS
66.6
0.52
1.3
65.91
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004586
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004707
152703519 - 152711634
8116