Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152722918_152723266_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

152722918 - 152723266

Intron Length:

349

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGATTCAT

5'SS Class:

strong_major

3'SS Sequence:

ATCTGTTCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GTCTTTTTACCC

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

75.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

66.4

0.37

0.9

59.8

41.1

Minor 5ss

30.5

-2.2

2.9

45.3

Minor BPS

58.3

0.24

1.6

65.82

40.4

Associated Gene:

Gene:

POGLUT2

Ensembl Gene ID:

ENSAPLG00000004596

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004736

152712355 - 152724230

11876