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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152727343_152728799_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152727343 - 152728799
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
ATCTGCTTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TATTTCTGAAAT
Flanking Amino Acid:
SVTTNHKNKAGNMKKQATKK
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
66.5
41.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
79.8
0.67
0.9
73.2
36.6
Minor 5ss
30.7
-2.2
3.2
37.8
47.1
Minor BPS
68
0.64
1.5
83.5
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004836
152722315 - 152740026
17712