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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152728927_152729811_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152728927 - 152729811
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGTATTT
5'SS Class:
major
3'SS Sequence:
CTTGTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
GAATTCTTACTG
Flanking Amino Acid:
KERKVLDLRRWYCISRPQYK
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.1
67.1
38.9
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
78.7
0.65
0.9
76.9
37.3
Minor 5ss
42.7
-0.8
3.4
61.6
45.1
Minor BPS
51.7
-0
1.7
53.68
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004836
152722315 - 152740026
17712