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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152729908_152729985_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152729908 - 152729985
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ATTTCTTTATTA
Flanking Amino Acid:
NFLYSTLGAGSLPPITQEEA
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.6
1.05
0.7
81.4
32.7
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
88.7
0.87
0.7
81.1
35.5
Minor 5ss
34.5
-1.8
2.9
43.8
43.9
Minor BPS
69.2
0.6
1.5
77.34
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004836
152722315 - 152740026
17712