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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152730091_152731908_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152730091 - 152731908
Intron Length:
1818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTATTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
CAATCTTTAAGC
Flanking Amino Acid:
GPFTGNTTLMRWFRQINDHF
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.1
39.9
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
82.9
0.74
0.9
80.4
37
Minor 5ss
46.4
-0.4
3.1
63.6
48.1
Minor BPS
60.4
0.3
1.7
63.96
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004836
152722315 - 152740026
17712