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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_15273075_15275648_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15273075 - 15275648
Intron Length:
2574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTCA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
ATGTTACTAATC
Flanking Amino Acid:
LLLKIHQKNKAVSGFQRILS
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
69.5
37.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.8
0.69
0.8
73.6
37
Minor 5ss
35.9
-1.6
3.4
47.9
47.7
Minor BPS
48.7
-0.1
1.9
62.23
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016352
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017064
15271451 - 15277063
5613