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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152732004_152733317_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152732004 - 152733317
Intron Length:
1314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
GTAACATTAACT
Flanking Amino Acid:
HGKNKTAGETALGALAKLTR
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
68.8
42.2
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
88
0.85
0.6
84.5
23.3
Minor 5ss
39.9
-1.1
2.9
49
41.5
Minor BPS
66.3
0.59
1.7
80.46
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004836
152722315 - 152740026
17712