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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152733451_152736772_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152733451 - 152736772
Intron Length:
3322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTATTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
CTCTATTGAACA
Flanking Amino Acid:
ATPVKASKAYRGRVLQQEVE
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
33.3
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
68.7
0.42
1
64.9
39.9
Minor 5ss
37.3
-1.4
3
47.8
47.6
Minor BPS
54.6
0.14
1.7
64.78
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004836
152722315 - 152740026
17712