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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152736963_152739735_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
152736963 - 152739735
Intron Length:
2773

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAGTTTTA
5'SS Class:
weak_major
3'SS Sequence:
TTACTTCGATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTACTTCGATT
Flanking Amino Acid:
DLLVQKNKYTVGGNLHCIIA
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.8
0.16
1.2
61.2
40
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
66.5
0.37
1
67.4
38.8
Minor 5ss
45.4
-0.5
3.1
67.1
44.1
Minor BPS
60.5
0.41
1.6
79.88
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004668
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004836
152722315 - 152740026
17712