About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152744098_152744606_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152744098 - 152744606
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCATGTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTATGTTAATT
Flanking Amino Acid:
EAPLLKRQTLAKRRYRKDVA
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
0.9
73.3
35.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.5
0.62
0.9
71.5
38.2
Minor 5ss
43.2
-0.7
2.4
52.2
38.7
Minor BPS
57.8
0.32
2.1
78.47
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004995
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005161
152743194 - 152757576
14383