About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152744723_152745372_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152744723 - 152745372
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTAAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCTAA
U12 Branch Point Sequence:
TTTCCTCTAAGC
Flanking Amino Acid:
QAIKTALTGKSEVLPSITQV
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.8
33.7
Major BPS
45.9
-0.2
1.2
42
38.7
Major PPT
73.3
0.52
0.9
70.5
33.8
Minor 5ss
35.7
-1.6
3.3
48.3
47.4
Minor BPS
55
0.14
2
72.58
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004995
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005161
152743194 - 152757576
14383