About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152745463_152746240_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
152745463 - 152746240
Intron Length:
778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTGATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
TCTTTTGTGATT
Flanking Amino Acid:
LPSLENEEKNSSEEEDEKEW
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78
38.6
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
81
0.7
0.9
77.7
40.6
Minor 5ss
33.7
-1.9
3
42.3
44.5
Minor BPS
50.9
0.11
2
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004995
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005161
152743194 - 152757576
14383