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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152747209_152748152_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
152747209 - 152748152
Intron Length:
944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATACTT
5'SS Class:
major
3'SS Sequence:
TATTATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATATTTAAATT
Flanking Amino Acid:
KRTLFEAMPEESSDFSQYQL
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
73.5
37.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.9
0.58
1.1
79.8
37.3
Minor 5ss
32.5
-2
3.3
48
47.5
Minor BPS
55.8
0.26
1.6
72.89
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004995
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005161
152743194 - 152757576
14383