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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152753690_152754489_F

Intron Information:

Intron Rank:
12
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
152753690 - 152754489
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTATGCTTT
5'SS Class:
weak_minor
3'SS Sequence:
CTCTGTTTTTCAG|T
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GATAAATGAATG
Flanking Amino Acid:
GRGLEPLLKFAEWWQEAQKN
Intron Amino Acid Position:
847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.9
0.19
1.4
62.3
44.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.8
0.81
0.8
83.6
31.4
Minor 5ss
73.8
0.8
2.1
77.1
38.5
Minor BPS
42.7
-0.6
1.8
46.08
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004995
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005161
152743194 - 152757576
14383