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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_152761183_152775261_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
152761183 - 152775261
Intron Length:
14079

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
GTCCATTTGACC
Flanking Amino Acid:
EIIRKIERQAGEKEDEQIVA
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
71.7
34.2
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
82.6
0.73
0.9
73.5
41.8
Minor 5ss
36.4
-1.5
3.3
47.9
47.8
Minor BPS
52.2
0.05
1.5
60.92
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005138
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005299
152760630 - 152779420
18791